miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Actinidia chinensis, Actinidia deliciosa, Actinidia eriantha, Antirrhinum majus, Barnadesia spinosa, Cichorium intybus, Coffea canephora, Fraxinus excelsior, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Ipomoea batatas, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Panax ginseng, Parthenium argentatum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Taraxacum kok-saghyz, Taraxacum officinale, Triphysaria pusilla, Triphysaria versicolor, Zinnia violacea, Capsicum annuum, Carthamus tinctorius, Catharanthus roseus, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST001684
species: Panax ginseng
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Panax ginseng Panax Araliaceae Apiineae Apiales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTTGGGACGGAGGGAGTATA

miRNA*
 CATTTAATCATGTCTCAAATGA

mismatches: 5
bulges: 1
View larger
pre-miRNA
 ATGAAACTCAAACAAAGGAGCTTCAAATACCAGGTTTTGGATCATTTAATCATGTCTCAAATGACATCAAATGCGGTAAAGGCGACCGAATTCGATATCA
ATCAGATATTCTCGACTTCAATCAGTTTTGATTTTTTTAAATCAAATTGACTATTTTTAGAATTAACAATTAAGCATATATAAATATATTTTTAAAATTA
TAAAAATTGGGATTAGTAATAAATTGTATATATTTTCTTTTGGTTATAATCTCTTCACATATATTTTAGCTAAAATAATAAAAAGATTAGTTTTAAAAAT
GGTCAATTTGACTTTAAAAAGTCAAAACTAAGCAATTAATTTGGGACGGAGGGAGTATAATTTATATATATATTATGTATAGATGTCGGAATTCATAA

dot-bracket secondary structure
.((((.(((........))).))))....(((.....)))...((((..((.((((((((((......((.((((((.......)))(((.((((((((.
....))))...)))).)))....((((((((((((((.((.(((((((((((((((((((((((((...(((((.(((((....))))).))))).((((
(((.....((((..(((((((.....))).)))).))))....))))))).((((......((((((....)))))).....))))))))))))))))))
))))))))))).)).))))))))))))))..))).)).))))))))))))..))))...(((((((((((...)))))))))))..............


SIMILARITIES
miRBase tae-MIR1122: 0.0003

PMRD osa-miRf10302-akr: 0.00008

microPC no hits		UniProt no hits

RFAM MIR1122: 0.0004		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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