ABOUT THIS RECORDspecies: Panicum virgatum
miRNA family: MIR2011
source: miRNEST
Taxonomy by NCBI:
Panicum virgatum Panicum Paniceae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCAGTGGCATATGCAAGTCT miRNA* ACCTGAATATGCAACTGCCCA mismatches: 4 bulges: 0 |
pre-miRNA
GTAGCGTCTTTCGATTGGAGCTGCAGTGGCATATGCAAGTCTGTCGAGAAGATCAAGGATGTACATGCTCGCTGTGGTGAAGGAGATTCCGCAGTTTGGA
GCGCCCTTGTCTAGCACATACCCTCCTTTGCCCGTAAATATGTAGCGTGGTTGGTAAGCTCTCATGATGGACCTGAATATGCAACTGCCCAAGTGAACTC
AACAAGACC
dot-bracket secondary structure
.....((((((((.((((....(((((.((((((.((.((((((((.(((((.(((((.......((((((((((((...((....)))))))))...))
))).))))))))(((...((((..((..(((.(((....)))..))).))..)))).))).)).)))))))).)).)))))).))))))))).)))....
...))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAGCGTCTTTCGATTGGAGCTGCAGTGGCATATGCAAGTCTGTCGAGAAGATCAAGGATGTACATGCTCGCTGTGGTGAAGGAGATTCCGCAGTTTGGA
GCGCCCTTGTCTAGCACATACCCTCCTTTGCCCGTAAATATGTAGCGTGGTTGGTAAGCTCTCATGATGGACCTGAATATGCAACTGCCCAAGTGAACTC
AACAAGACC
dot-bracket secondary structure
.....((((((((.((((....(((((.((((((.((.((((((((.(((((.(((((.......((((((((((((...((....)))))))))...))
))).))))))))(((...((((..((..(((.(((....)))..))).))..)))).))).)).)))))))).)).)))))).))))))))).)))....
...))))).
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|A8MRC7|B3GT2_ARATH: 0.00000000006 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
