ABOUT THIS RECORDspecies: Avena barbata
miRNA family: MIRf341
source: miRNEST
Taxonomy by NCBI:
Avena barbata Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAATACTCCCTCCGACCCAAA miRNA* TGGGTCGGAGGGAGTAGAACA mismatches: 3 bulges: 0 |
pre-miRNA
GTAACTTTATAATACTCCCTCCGACCCAAATTAGTTGACTCAATTTTGTCAAGATACTGATGAATCTAATACTAAATTATGTCTAGATACAATTGAATCT
AGATAAATCTAAGTCAACTAATTTGGGTCGGAGGGAGTAGAACAATGTGT
dot-bracket secondary structure
...((.......(((((((((((((((((((((((((((((((((.((((.(((((.((((..............))))))))).)))).))))))...(
(((....)))).))))))))))))))))))))))))))).......))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAACTTTATAATACTCCCTCCGACCCAAATTAGTTGACTCAATTTTGTCAAGATACTGATGAATCTAATACTAAATTATGTCTAGATACAATTGAATCT
AGATAAATCTAAGTCAACTAATTTGGGTCGGAGGGAGTAGAACAATGTGT
dot-bracket secondary structure
...((.......(((((((((((((((((((((((((((((((((.((((.(((((.((((..............))))))))).)))).))))))...(
(((....)))).))))))))))))))))))))))))))).......))..
SIMILARITIES| miRBase far-MIR1122: 0.0001 PMRD no hits microPC no hits | UniProt no hits RFAM MIR1122: 0.0001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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