ABOUT THIS RECORDspecies: Papaver somniferum
miRNA family: MIR2004
source: miRNEST
Taxonomy by NCBI:
Papaver somniferum Papaver Papaveraceae Ranunculales stem eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGTTTTTATTTTATTTTTT miRNA* TAGAGAAAAAAAAACAAAAA mismatches: 3 bulges: 1 |
pre-miRNA
CGGTTTTTGTTTTTGTTTTTATTTTATTTTTTCTTTTTATTTATTTTTTCCGGAAAGGAGAGGGGTTAAGGAGACCCCACCAGCTACACGAAAGCGACAA
AAAAAATAAAAAAGATAGAGAAAAAAAAACAAAAAACGCAAGA
dot-bracket secondary structure
....((((((((((((((((.((((.((..((.(((((((((.((((((((.....)))).((((((.....))))))....(((.......)))...))
)).))))))))).)).)).)))).))))))))))...))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CGGTTTTTGTTTTTGTTTTTATTTTATTTTTTCTTTTTATTTATTTTTTCCGGAAAGGAGAGGGGTTAAGGAGACCCCACCAGCTACACGAAAGCGACAA
AAAAAATAAAAAAGATAGAGAAAAAAAAACAAAAAACGCAAGA
dot-bracket secondary structure
....((((((((((((((((.((((.((..((.(((((((((.((((((((.....)))).((((((.....))))))....(((.......)))...))
)).))))))))).)).)).)))).))))))))))...))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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