ABOUT THIS RECORDspecies: Parthenium argentatum
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Parthenium argentatum Parthenium Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGGTTCAATAAAGCTGTGG miRNA* ACGGCTTTCTTGAACTGCATG mismatches: 1 bulges: 0 |
pre-miRNA
TAATGGTGCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGTTTTGATCTGTCAGATCTGTGTTTTTTTATATAATCTTTGCGGTTCAATAAAG
CTGTGGGAAGATAGAGACAGTATCAAA
dot-bracket secondary structure
...(((((((.((((((((.((((((((((((.((((((((((.(((((..(((((...)))))...............))))).)))))))))).))))
)))))))).)))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TAATGGTGCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGTTTTGATCTGTCAGATCTGTGTTTTTTTATATAATCTTTGCGGTTCAATAAAG
CTGTGGGAAGATAGAGACAGTATCAAA
dot-bracket secondary structure
...(((((((.((((((((.((((((((((((.((((((((((.(((((..(((((...)))))...............))))).)))))))))).))))
)))))))).)))))))).)))))))..
SIMILARITIES| miRBase ath-MIR396a: 0.0000000001 PMRD ath-miRf11010-akr: 0.000000000007 microPC miR396: 5e-25 | UniProt no hits RFAM MIR396: 0.0000000005 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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