miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001928
species: Picea engelmannii x Picea glauca
miRNA family: MIR397
source: miRNEST

Taxonomy by NCBI:
Picea engelmannii x Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCATTGAGTGCAGCGTTGACG

miRNA*
 TTAACCCTGCACTCAATAGTA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CTTGCTAGCCGTGGCAACCACATCATTGAGTGCAGCGTTGACGATAGAAATTCCACCAATAGATTTGATAATATCTATCTATTTGTGGAATGCCATTGAT
ATTGTTAACCCTGCACTCAATAGTATGTTTGCCAATGGCTCCAT

dot-bracket secondary structure
......((((.((((((.((.((.(((((((((((.((((((((((...(((((((.(((((((..(((...))).))))))).)))))))........)
))))))))).))))))))))).)).)).))))))..))))....


SIMILARITIES
miRBase pab-MIR397: 4e-72

PMRD vvi-miR397b: 0.00003

microPC miR397: 3e-51		UniProt no hits

RFAM MIR397: 0.0005		most similar mature miRNAs

Identical with: miR397 from microPC (MNEST045153)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;