miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST001944
species: Picea glauca
miRNA family: MIR3709
source: miRNEST

Taxonomy by NCBI:
Picea glauca Picea Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCAGATGCTTTAAATTCCCGA

miRNA*
 GGGATTTAAAGCATTTGAAG

mismatches: 0
bulges: 1
View larger
pre-miRNA
 AGCAGCATCGTGTGGCATAAATTCAAGAATTTCAGATGCTTTAAATTCCCGACAGATTCTTGCGATGACCAAATGGATTTCGGGATTTAAAGCATTTGAA
GCTCTGGATTTATGCCAAACAGGAGCGCA

dot-bracket secondary structure
.((.((.((((.(((((((((((((.((.(((((((((((((((((.(((((..(((((...............))))))))))))))))))))))))))
).))))))))))))))).)).)).)))).


SIMILARITIES
miRBase pab-MIR3709a: 2e-49

PMRD no hits

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: pab-MIR3709a from miRBase (MNEST039410)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;