miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST000196
species: Avena sativa
miRNA family: MIR1439
source: miRNEST

Taxonomy by NCBI:
Avena sativa Avena Aveninae Poeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTTGGAACGGAGGGAGTACT

miRNA*
 TACTCCCCCCGTTTCAAAATA

mismatches: 3
bulges: 0
View larger
pre-miRNA
 CAGCGTAGCTACTACTCCCCCCGTTTCAAAATATAAGATATTTTAGCTTTGTGAAGCAAATGTATCTAGACTACTTTTAGTATATAGGTTCACTCATGTT
TAGAATGAATCTACACACTAAAACAAGTTTAGATACATTTTCTTTACAATCCTAACTTTATATTTTTTTGGAACGGAGGGAGTACTGATCAACTC

dot-bracket secondary structure
.(((...)))..(((((((.(((((((((((...((.(((..((((..((((((((.(((((((((((((((..(((((((...((((((((.((.....
..)).))))))))...)))))))..))))))))))))))).))))))))..))))...))).)).))))))))))).)))))))...........


SIMILARITIES
miRBase no hits

PMRD osa-miRf10805-akr: 0.0006

microPC miR1439: 4e-82		UniProt no hits

RFAM MIR1122: 0.0002		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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