ABOUT THIS RECORDspecies: Pinus banksiana
miRNA family: MIR1312
source: miRNEST
Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGAGAGAAAATGGCCACA miRNA* AGGTCATTTGCTCTTCGAATT mismatches: 2 bulges: 0 |
pre-miRNA
GGTTGCTTCAACAACATCCATGAGGTCATTTGCTCTTCGAATTTTTCCATATATTCTGAATTCAAATTTGGAGAGAGGCTTAAAGTTTGGAGAGAAAATG
GCCACATAGATGTTATTCGGAATAG
dot-bracket secondary structure
.((((...)))).(((((.(((.((((((((.(((((((((((((.((.....((((((((....))))))))...))...))))))))))))).)))))
))).))).)))))............
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GGTTGCTTCAACAACATCCATGAGGTCATTTGCTCTTCGAATTTTTCCATATATTCTGAATTCAAATTTGGAGAGAGGCTTAAAGTTTGGAGAGAAAATG
GCCACATAGATGTTATTCGGAATAG
dot-bracket secondary structure
.((((...)))).(((((.(((.((((((((.(((((((((((((.((.....((((((((....))))))))...))...))))))))))))).)))))
))).))).)))))............
SIMILARITIES| miRBase pta-MIR1312: 0.0000004 PMRD pta-miR1312: 0.0000004 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
