ABOUT THIS RECORDspecies: Pinus banksiana
miRNA family: MIR1314
source: miRNEST
Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGCCTTGAATGTTAGGAGAA miRNA* CTTTAACATTAGAGGCCGATA mismatches: 1 bulges: 1 |
pre-miRNA
TCCAATTCCAATTGATAACATGTTAGTTAGCTGAAGAGATTCTTTAACATTAGAGGCCGATATAGAATAATATTCCTATTCTTAATCGGCCTTGAATGTT
AGGAGAACGTTTTCCTCTACCTAAGCATGCTATCTCAAAGGAGTT
dot-bracket secondary structure
...((((((....((((.((((((((.(((..(((((..((((((((((((.(((((((((..((((((.......))))))..))))))))).))))))
).)))))..)))))..))).)))).)))).)))).....))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCCAATTCCAATTGATAACATGTTAGTTAGCTGAAGAGATTCTTTAACATTAGAGGCCGATATAGAATAATATTCCTATTCTTAATCGGCCTTGAATGTT
AGGAGAACGTTTTCCTCTACCTAAGCATGCTATCTCAAAGGAGTT
dot-bracket secondary structure
...((((((....((((.((((((((.(((..(((((..((((((((((((.(((((((((..((((((.......))))))..))))))))).))))))
).)))))..)))))..))).)))).)))).)))).....))))))
SIMILARITIES| miRBase pta-MIR1314: 2e-71 PMRD pta-miR1314: 2e-71 microPC miR1314: 1e-25 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
