miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002021
species: Pinus banksiana
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Pinus banksiana Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCTACTCCTCCCATTCC

miRNA*
 TGTGGAAGGATAGGGTAAGACT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 GAAGGCGGATGGTTGCGAGAAAGGGAGGTGTTATGGTTAGAAGTCTTGAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTACTTCATT
AATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATTCCTTTTGCCTTCACCACACTTCCCTTTCCAACGCAACACAGCAATATAGT

dot-bracket secondary structure
....((.....((((((.(((((((((((((...(((..((((....((((.((((.(((((((((.((((((..((....((((((.............
..))))))...))))))))))))).)))).)))).))))....))))))))))))))))))))...))))))...))........


SIMILARITIES
miRBase pta-MIR482a: 2e-44

PMRD pta-miR482a: 2e-44

microPC miR482: 9e-40		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;