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Species belonging to selected taxon:

Pinus contorta



ABOUT THIS RECORD

ID: MNEST002026
species: Pinus contorta
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Pinus contorta Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCTATTCCTCCCATT

miRNA*
 TGGGAGGGTAGGAGAAGGCT

mismatches: 0
bulges: 2
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pre-miRNA
 GGGATCTGTCATGTGGATGGAAGTCTTGAGGAGTGGGAGGGTAGGAGAAGGCTCTGTGGTGAGGTCTCAGTCATAATCTCATCAGTCTTCCCTATTCCTC
CCATTCCTATTGCCTCCCTTCACAATGTAACACAG

dot-bracket secondary structure
.((.....)).((((((.(((.((....(((((((((((((((((.((((((....(((((((((..........))))))))))))))))))).)))))
))))))))...)).))).)))))).(((...))).


SIMILARITIES
miRBase pta-MIR482c: 6e-40

PMRD pta-miR482c: 6e-40

microPC miR482: 0.0000001		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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