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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002030
species: Pinus contorta
miRNA family: MIR536
source: miRNEST

Taxonomy by NCBI:
Pinus contorta Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGTGCCAAGCTGTGTGCATC

miRNA*
 TGCAGACTGCCTGGCACGATT

mismatches: 3
bulges: 0
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pre-miRNA
 ACTTCTTTGGATGCAGACTGCCTGGCACGATTCGTACTCTGGACGACTCGTGCCAAGCTGTGTGCATCTCAAGATC

dot-bracket secondary structure
...((((.(((((((.((.((.((((((((.((((.......)))).)))))))).)).)).))))))).))))..


SIMILARITIES
miRBase ppt-MIR536f: 0.00001

PMRD ppt-miR536f: 0.00001

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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