ABOUT THIS RECORDspecies: Pinus contorta
miRNA family: MIR536
source: miRNEST
Taxonomy by NCBI:
Pinus contorta Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGTGCCAAGCTGTGTGCATC miRNA* TGCAGACTGCCTGGCACGATT mismatches: 3 bulges: 0 |
pre-miRNA
ACTTCTTTGGATGCAGACTGCCTGGCACGATTCGTACTCTGGACGACTCGTGCCAAGCTGTGTGCATCTCAAGATC
dot-bracket secondary structure
...((((.(((((((.((.((.((((((((.((((.......)))).)))))))).)).)).))))))).))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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ACTTCTTTGGATGCAGACTGCCTGGCACGATTCGTACTCTGGACGACTCGTGCCAAGCTGTGTGCATCTCAAGATC
dot-bracket secondary structure
...((((.(((((((.((.((.((((((((.((((.......)))).)))))))).)).)).))))))).))))..
SIMILARITIES| miRBase ppt-MIR536f: 0.00001 PMRD ppt-miR536f: 0.00001 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
