ABOUT THIS RECORDspecies: Pinus pinaster
miRNA family: MIR1314
source: miRNEST
Taxonomy by NCBI:
Pinus pinaster Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGCCTTGAATGTTAGGAGAA miRNA* CTTCAACATTAGAGGCCAATA mismatches: 2 bulges: 1 |
pre-miRNA
CTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATCATATTCTTATTCTTAATCGGCCTTGAATGTTAGGAGAATGTTTTCC
dot-bracket secondary structure
..(((((.(((((((((((((.((((((.((..(((((.........)))))..)).)))))).)))))).))))))).))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGAAGAGATTCTTCAACATTAGAGGCCAATATAGAATCATATTCTTATTCTTAATCGGCCTTGAATGTTAGGAGAATGTTTTCC
dot-bracket secondary structure
..(((((.(((((((((((((.((((((.((..(((((.........)))))..)).)))))).)))))).))))))).))))).
SIMILARITIES| miRBase pta-MIR1314: 2e-38 PMRD pta-miR1314: 2e-38 microPC miR1314: 6e-33 | UniProt no hits RFAM no hits | most similar mature miRNAs |
Identical with: miR1314 from microPC (MNEST046760) |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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