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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST002054
species: Pinus taeda
miRNA family: MIR482
source: miRNEST

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCTACTCCTCCCATTCC

miRNA*
 TGTGGAAGGATAGGGTAAGACT

mismatches: 2
bulges: 2
View larger
pre-miRNA
 GGTTGCGAGAAAGGGAGGTGATATGGTTAGAAGTCTTGAGGTGTGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGC
TCCAGTCTTCCCTACTCCTCCCATTCCTTTTGCCTTCACCACACTTCCCTTTCCAACGCAGCACA

dot-bracket secondary structure
.((((((.((((((((((((...((((..((((....((((.((((.(((((((((.((((((..((....((((((...............))))))..
.))))))))))))).)))).)))).))))....))))))))))))))))))))...))))))...


SIMILARITIES
miRBase pta-MIR482a: 6e-47

PMRD pta-miR482a: 6e-47

microPC miR482: 3e-42		UniProt no hits

RFAM no hits		most similar mature miRNAs

Identical with: pta-MIR482a from miRBase (MNEST039429)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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