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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST002104
species: Populus deltoides
miRNA family: MIRf1049
source: miRNEST

Taxonomy by NCBI:
Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCCCAGGATCATGTCATGGTG

miRNA*
 TCATGATAGGGAATTGGGAGT

mismatches: 3
bulges: 2
View larger
pre-miRNA
 ACCATCATAGTACATGTTCATCCATGTACCAGCCCAGGATCATGTCATGGTGTGTGCATATGCATGGATCTGGTATACATGCATGCATACATGCCTGTAG
ATATCATCACATCATGATAGGGAATTGGGAGTAGGCAGATTTTTAGAATGCCCATTATAT

dot-bracket secondary structure
.........(((((((......)))))))...(((((..((.(((((((((((((((....)))).((..(((((((((.(((((....))))).)))).
.))))))))))))))))))..)).)))))....((((..((....)).))))........


SIMILARITIES
miRBase no hits

PMRD ptc-miRf11143-akr: 1e-50

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




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