ABOUT THIS RECORDspecies: Populus tremula x Populus alba
miRNA family: MIRf1215
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CCTGGTCATTTTGTTTATAGG miRNA* TGTGAACATCTTGACCAGGGG mismatches: 3 bulges: 0 |
pre-miRNA
ACATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCAAGGACTTCTGGGAANAGCTTTCTTTTGCCACAATGCAGGACAGATGTATTATACGT
GTCTGATCCCTGTGAACATCTTGACCAGGGGGATNAAGG
dot-bracket secondary structure
.........((((((((((...((((((((((....(((.(((.(((...)))..)))..)))...((((((......))))))((((((((...)))).
.))))...))))))))))...))))))))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
Source sequences
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ACATTAACATCCCTGGTCATTTTGTTTATAGGACTCGGTTTTCAAGGACTTCTGGGAANAGCTTTCTTTTGCCACAATGCAGGACAGATGTATTATACGT
GTCTGATCCCTGTGAACATCTTGACCAGGGGGATNAAGG
dot-bracket secondary structure
.........((((((((((...((((((((((....(((.(((.(((...)))..)))..)))...((((((......))))))((((((((...)))).
.))))...))))))))))...))))))))))........
SIMILARITIES| miRBase no hits PMRD ptc-miRf11908-akr: 6e-65 microPC no hits | UniProt sp|Q9LF38|EDL1_ARATH: 0.000000000000001 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
Source sequences
download this record
