ABOUT THIS RECORDspecies: Populus tremula x Populus tremuloides
miRNA family: MIR1447
source: miRNEST
Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGAATTGCAGTGCCTTGATC miRNA* TCATGGCACTGCAATTCTAAA mismatches: 3 bulges: 0 |
pre-miRNA
CTCGTGAACGAAGGAGGCCCTAATCATGGCACTGCAATTCTAAATATCTGTTGGCATGTTGCGATGCCAGACGTTTGAAATTGACATATCATTTGTTAAT
CAGAATTGCAGTGCCTTGATCAGGGCTTTGTTTGTTCCTGT
dot-bracket secondary structure
..((.(((((((.((((((((.((((.((((((((((((((((((.((...((((((......)))))))).))))...(((((((.......)))))))
.)))))))))))))).)))).)))))))).))))))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCGTGAACGAAGGAGGCCCTAATCATGGCACTGCAATTCTAAATATCTGTTGGCATGTTGCGATGCCAGACGTTTGAAATTGACATATCATTTGTTAAT
CAGAATTGCAGTGCCTTGATCAGGGCTTTGTTTGTTCCTGT
dot-bracket secondary structure
..((.(((((((.((((((((.((((.((((((((((((((((((.((...((((((......)))))))).))))...(((((((.......)))))))
.)))))))))))))).)))).)))))))).))))))).)).
SIMILARITIES| miRBase ptc-MIR1447: 2e-37 PMRD ptc-miRf11238-akr: 4e-41 microPC miR1447: 1e-50 | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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