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Species belonging to selected taxon:

Populus tremula x Populus tremuloides



ABOUT THIS RECORD

ID: MNEST002203
species: Populus tremula x Populus tremuloides
miRNA family: MIR396
source: miRNEST

Taxonomy by NCBI:
Populus tremula x Populus tremuloides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAACTG

miRNA*
 GATCAATAAAACTGGGGGAAGA

mismatches: 4
bulges: 1
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pre-miRNA
 GGTGTGTTTGTATGTGACCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCACCTATTAGATTTATGTTGATGTTGTTGTGCGATATGCCATGACCAT
ATGACATTGTATTCATTTTTGCTGCGGATCAATAAAACTGGGGGAAGATACAAACAGGAGCAAAGAAAGTTGCTAT

dot-bracket secondary structure
((((..(((...(((...(((.(((((((.(((((.(((.(((.((((.(((((.....((((...(((.((((((((((((((.....).))))))...
..)))))))....))).)))).))))).)))).))).)))..)))))))))))).))).)))..)))...))))..


SIMILARITIES
miRBase ptc-MIR396b: 3e-61

PMRD ptc-miR396b: 3e-61

microPC miR396: 2e-50		UniProt no hits

RFAM MIR396: 8e-62		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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