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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Limnanthes alba, Raphanus raphanistrum, Raphanus raphanistrum subsp. landra, Raphanus raphanistrum subsp. maritimus, Raphanus sativus, Raphanus sativus var. oleiformis, Thellungiella halophila, Tropaeolum majus, Carica papaya, Arabidopsis thaliana, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST002429
species: Raphanus sativus var. oleiformis
miRNA family: miR160a
source: miRNEST

Taxonomy by NCBI:
Raphanus sativus var. oleiformis Raphanus sativus Raphanus Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GCGTATGAGGAGCCAAGCATA

miRNA*
 TGCCTGGCTCCCTGTATGCCA

mismatches: 2
bulges: 0
View larger
pre-miRNA
 ATGTATTATATATGTATATGCCTGGCTCCCTGTATGCCATACACTAAGTTCATCGACCATCGGCGACCTCGGTGGATGGCGTATGAGGAGCCAAGCATAT
TCTCAGCATAGACA

dot-bracket secondary structure
.(((....(((.((.((((((.(((((((.((((((((((.((((.((.((.((((...)))).)).)).)))).)))))))))).))))))).))))))
...))..))).)))


SIMILARITIES
miRBase bra-MIR160a: 4e-22

PMRD bra-miR160a: 4e-22

microPC miR160: 3e-32		UniProt no hits

RFAM mir-160: 0.000000000000007		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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