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Species belonging to selected taxon:

Solanum melongena



ABOUT THIS RECORD

ID: MNEST002665
species: Solanum melongena
miRNA family: MIRf445
source: miRNEST

Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGATGCAGCATCATCAAGAT

miRNA*
 CTTGATGATGTTGCATCCTCA

mismatches: 1
bulges: 0
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pre-miRNA
 AAGGAGAGTCATATGTTAGATGATGCAGCATCATCAAGATTCCCAAAAGAGAAGAGAAGAGATTTGAACTATATATCCAATATTTATCCTAAATATCTTT
AATATAACATAATTCCCCCTTCAAGTTTTGTGAATCTTGATGATGTTGCATCCTCAAACACTGACTGATAAA

dot-bracket secondary structure
......(((((..((((.((.(((((((((((((((((((((.(((((..((((.(((......((...(((((.....(((((((...)))))))....
.))))).))...)))...))))...))))).))))))))))))))))))))).)).)))).)))))......


SIMILARITIES
miRBase tcc-MIR172c: 0.00000004

PMRD ath-miRf10634-akr: 0.0000006

microPC miR172: 0.00003		UniProt no hits

RFAM mir-172: 0.000003		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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