ABOUT THIS RECORDspecies: Solanum melongena
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Solanum melongena Solanum Solaneae Solanoideae Solanaceae Solanales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTTCATCATCATCATCTTCA miRNA* ATGATGATGATTTGAAATCG mismatches: 4 bulges: 1 |
pre-miRNA
CTGTATATGATGATGGTTGTTCTGATTGTTGTTATGGTGATGATGATGATGATTTGAAATCGACGACCCTCCCATCGTCGCCGGCGCCGGATTCGGCGGC
GGCAACAACCTTGTACTAGCTGAAACAACAACGTTTGTTGTTGTCGTTATCGTCGTCGTCGTTGTCTCTTCATCATCATCATCTTCATCATCGTTTACAC
TTTCTTCTGAACTATCATCTCCACCA
dot-bracket secondary structure
.......((..((((((.((((.((..((.((.((((((((((.(((((((((.((((...(((((........)))))((((.(((((....))))).)
))).(((((..((.((((((....((((((((....)))))))).))))..))...))..)))))...))))..))))))))).))))))))))..))))
..))....)))).))))))..))...
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTGTATATGATGATGGTTGTTCTGATTGTTGTTATGGTGATGATGATGATGATTTGAAATCGACGACCCTCCCATCGTCGCCGGCGCCGGATTCGGCGGC
GGCAACAACCTTGTACTAGCTGAAACAACAACGTTTGTTGTTGTCGTTATCGTCGTCGTCGTTGTCTCTTCATCATCATCATCTTCATCATCGTTTACAC
TTTCTTCTGAACTATCATCTCCACCA
dot-bracket secondary structure
.......((..((((((.((((.((..((.((.((((((((((.(((((((((.((((...(((((........)))))((((.(((((....))))).)
))).(((((..((.((((((....((((((((....)))))))).))))..))...))..)))))...))))..))))))))).))))))))))..))))
..))....)))).))))))..))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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