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Species belonging to selected taxon:
Cichorium intybus
,
Lactuca perennis
,
Lactuca saligna
,
Lactuca sativa
,
Lactuca serriola
,
Lactuca virosa
,
Taraxacum kok-saghyz
,
Taraxacum officinale
,
Cichorium endivia
ABOUT THIS RECORD
ID:
MNEST002703
species:
Taraxacum officinale
miRNA family:
MIR1436
source:
miRNEST
Taxonomy by NCBI:
Taraxacum officinale
Taraxacum
Crepidinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTATTTTGGGACGGAGGGAGT
miRNA*
CCATCTTTTCTTTAAATGACA
mismatches:
3
bulges:
2
View larger
pre-miRNA
TCATTAGTTAACTTCCAATCTTGTAATGGTTATAC
CCATCTTTTCTTTAAATGACA
CTTATTAGACAGTCTGGGTTAATATTTCAACAATTCTTATCGTT
AACACGGGATTGAAGCAGACTATTCATCTTCTTTGCATCACCATGATATCTTGTTTGCAAGCAAAGCATAGATAAGGAGTTATCAAAGAAGCTTCATTGG
ATTTGCTGCCTATCTCTCAAAGAGGAAAAACAAAAGTTGGCTGGGAAGTTTCAGTGACCAAAGACTA
TTATTTTGGGACGGAGGGAGT
ATTATAATGAAG
ACGTTTGGAGTTTTGGTTAT
dot-bracket secondary structure
........((((((((((...(((.((.((.((((
((.(((.((((..((((((..
((....))..(((((.(((((..(((((..(((((((.......
.....))))))).(((((((((.....((((((((.......(((((.((((((((((.......)))..))))))).)))))))))))))......)))
.))))))(((..(((((...)))))...(((....))))))...))))).....)))))..))))).
)))))).)))).))).)).))
)).)).))....
))).))))).....))))).
SIMILARITIES
miRBase
osa-MIR1862e
:
0.00002
PMRD
osa-miRf10302-akr
:
0.00002
microPC
miR1439
:
0.000004
UniProt
no hits
RFAM
MIR1122: 0.000005
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record