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Species belonging to selected taxon:

Agrostis stolonifera, Oryza sativa, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST002790
species: Triticum turgidum subsp. durum
miRNA family: MIR1120
source: miRNEST

Taxonomy by NCBI:
Triticum turgidum subsp. durum Triticum turgidum Triticum Triticeae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ACTCCCTCCGTCTCAAAATAT

miRNA*
 ATTTTGGGACGGAGGGAGTAT

mismatches: 0
bulges: 0
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pre-miRNA
 ATGTGTATGACAGCTACTCCCTCCGTCTCAAAATATAAGAGCGTTTTTGGCACTACACTAGTGTAAAAAATGCTCTTATATTTTGGGACGGAGGGAGTAT
GTTTGTTTGGAG

dot-bracket secondary structure
........(((((.((((((((((((((((((((((((((((((((((.((((((...)))))).)))))))))))))))))))))))))))))))))).
..))))).....


SIMILARITIES
miRBase tae-MIR1120: 6e-18

PMRD tae-miR1120: 6e-18

microPC miR1439: 1e-43		UniProt no hits

RFAM MIR1122: 2e-27		most similar mature miRNAs

Identical with: miR1439 from microPC (MNEST046836)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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