ABOUT THIS RECORDspecies: Vitis shuttleworthii
miRNA family: miR399h
source: miRNEST
Taxonomy by NCBI:
Vitis shuttleworthii Vitis Vitaceae Vitales rosids incertae sedis rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTGCCGTTCTCCTCTGGCACT miRNA* TGTCGGAGGCGAACGAGAGCG mismatches: 3 bulges: 0 |
pre-miRNA
CTCGGTGGTGTCGGAGGCGAACGAGAGCGAACTTCCGGAGGTTTCGATCAACTCCGACGACCCAGTGGCGCTGCCGTTCTCCTCTGGCACTACCGG
dot-bracket secondary structure
.((((((((((((((((.(((((..((((.((((((((((...........)))))..))...)))..))))..))))).))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTCGGTGGTGTCGGAGGCGAACGAGAGCGAACTTCCGGAGGTTTCGATCAACTCCGACGACCCAGTGGCGCTGCCGTTCTCCTCTGGCACTACCGG
dot-bracket secondary structure
.((((((((((((((((.(((((..((((.((((((((((...........)))))..))...)))..))))..))))).))))))))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P31687|4CL2_SOYBN: 0.000004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
