ABOUT THIS RECORDspecies: Bruguiera gymnorhiza
miRNA family: MIRf789
source: miRNEST
Taxonomy by NCBI:
Bruguiera gymnorhiza Bruguiera Rhizophoraceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCGGTTCAATAAAGCTGTGG miRNA* ACAGCTTTCTTGAACTGCATC mismatches: 1 bulges: 0 |
pre-miRNA
AAATGAGTGAATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTGT
GGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAGGGAAGTTCT
dot-bracket secondary structure
...........(((((((.((((((((.((((((((((((.((((((((((..(((..((.((((((......((((.......)))).)))))).))..
)))..)))))))))).)))))))))))).)))))))).))))))).(((...)))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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AAATGAGTGAATGGCCCTCTTTGTATTCTTCCACAGCTTTCTTGAACTGCATCTCTTAGATTTGTTTTTGCATGCCACGGTTTCTGGCTGGACGACTTGT
GGATTTGCGGTTCAATAAAGCTGTGGGAAGATACAGACAGGGTCAGGGAAGTTCT
dot-bracket secondary structure
...........(((((((.((((((((.((((((((((((.((((((((((..(((..((.((((((......((((.......)))).)))))).))..
)))..)))))))))).)))))))))))).)))))))).))))))).(((...)))
SIMILARITIES| miRBase tcc-MIR396b: 6e-16 PMRD ath-miRf11010-akr: 6e-16 microPC miR396: 9e-52 | UniProt no hits RFAM MIR396: 0.0000000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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