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Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002897
species: Carthamus tinctorius
miRNA family: MIR162
source: miRNEST

Taxonomy by NCBI:
Carthamus tinctorius Carthamus Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGATAAACCTCTGCATCCAG

miRNA*
 GGAGTCAGCGGTTCATCGATC

mismatches: 4
bulges: 0
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pre-miRNA
 TGTGCGTTTGGTGGAGTTCATTGGAGTCAGCGGTTCATCGATCAGTTCCTCTAACAAACATACGAACAAGGGGGAGAAAGAGAGAGGAATCGATCGATAA
ACCTCTGCATCCAGTGTCCACCCCTGCCGTGCC

dot-bracket secondary structure
.(((((...((((((...(((((((..(((.((((.(((((((.((((((((..............................)))))))).))))))).)
))).)))..))))))))))))).....))))).


SIMILARITIES
miRBase osa-MIR162a: 0.0000000004

PMRD osa-miR162a: 0.0000000004

microPC miR162: 0.000000000002		UniProt no hits

RFAM MIR162_2: 0.000000008		most similar mature miRNAs

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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