miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Barnadesia spinosa
,
Cichorium intybus
,
Gerbera hybrid cultivar
,
Guizotia abyssinica
,
Helianthus argophyllus
,
Helianthus ciliaris
,
Helianthus exilis
,
Helianthus paradoxus
,
Helianthus petiolaris
,
Helianthus tuberosus
,
Lactuca perennis
,
Lactuca saligna
,
Lactuca sativa
,
Lactuca serriola
,
Lactuca virosa
,
Parthenium argentatum
,
Taraxacum kok-saghyz
,
Taraxacum officinale
,
Zinnia violacea
,
Carthamus tinctorius
,
Centaurea maculosa
,
Centaurea solstitialis
,
Cichorium endivia
,
Artemisia annua
,
Helianthus annuus
ABOUT THIS RECORD
ID:
MNEST002924
species:
Centaurea maculosa
miRNA family:
MIR2673
source:
miRNEST
Taxonomy by NCBI:
Centaurea maculosa
Centaurea
Centaureinae
Cardueae
Carduoideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
CTTCTTCCTCTTCCTCTTCCT
miRNA*
AAGAGCAGGAGGAGTTGGAA
mismatches:
3
bulges:
1
View larger
pre-miRNA
CCAACAACACGAG
AAGAGCAGGAGGAGTTGGAA
GAAGGGTAACCACTCCAGTCGGTCGGAAAATGACGACGGCGACGTTGAACGCCGCGATGAACGGCGG
TTTGGCCGCAGTAGGTGCCGGCGGCGGTGGTGGTGGTGGTGGAGTCATCGGCCAAAAGACGGTGCTGATAACAGGGGTTAGCAGAGGTCTTGGGAGAGCC
CTAGCCCTAGAATTGGGGAAGAGAGGCCATTCTGTTATTGGCTGCTCTCGAACTCAACAAAAACTCGATTCTCTTCAATCGGAGCTCTCTTCTGAACCTT
CTT
CTTCTTCCTCTTCCTCTTCCT
CTGAAAAACA
dot-bracket secondary structure
..........(((
(((((.((((((((..((((
(((((.(((((((((((((((((((........))))..)))).(((..(((((((.((....((((
(...)))))..))..)).))))).)))))).))))))(((.((....)).)))..(((((..(((((((.......)))))))...)))))(((((((((
(...(((.......)))((((((((((((.........)))))....((((.............)))).)))))))....)).)))))))).))..))))
)))
))..)))))))).))))).))
).........
SIMILARITIES
miRBase
no hits
PMRD
no hits
microPC
no hits
UniProt
no hits
RFAM
no hits
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
Source sequences
download this record