miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST002953
species: Centaurea solstitialis
miRNA family: MIR530
source: miRNEST

Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCATTTGCACCTGCACCTTT

miRNA*
 GGGTGCAGGACAAGTGCAGG

mismatches: 1
bulges: 1
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pre-miRNA
 TTGCCTTTGTCTGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTG
TGTGAGTAGGTGGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCAGGCTAAGACA

dot-bracket secondary structure
....(((.(((((((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).)))
.))))).)))))))))))...))))))))))))))))))))).))))))))))).)))...


SIMILARITIES
miRBase ptc-MIR530a: 0.00000003

PMRD ptc-miRf11025-akr: 0.00000003

microPC miR1030: 5e-35		UniProt no hits

RFAM MIR530: 0.0000006		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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