ABOUT THIS RECORDspecies: Cicer arietinum
miRNA family: MIR156
source: miRNEST
Taxonomy by NCBI:
Cicer arietinum Cicer Cicereae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACAGAAGAGAGTGAGCAC miRNA* GCTCACTTTCTATCTGTCACC mismatches: 0 bulges: 1 |
pre-miRNA
GATTCTTATGAAGGTTAAAGGTAAAAGGAGGTGACAGAAGAGAGTGAGCACACATGTATTTTCTTGCATGATGTTTCATGCTTGAAGCTATGCGTGCTCA
CTTTCTATCTGTCACCCCATCTTCATCTTTTTCTTTTCAATATC
dot-bracket secondary structure
.........(((((..((((((.((.((.((((((((((((((((((((((.((((...((((..((((((....))))))..)))).)))).)))))))
)))))).)))))))))))...)).)))))).)))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GATTCTTATGAAGGTTAAAGGTAAAAGGAGGTGACAGAAGAGAGTGAGCACACATGTATTTTCTTGCATGATGTTTCATGCTTGAAGCTATGCGTGCTCA
CTTTCTATCTGTCACCCCATCTTCATCTTTTTCTTTTCAATATC
dot-bracket secondary structure
.........(((((..((((((.((.((.((((((((((((((((((((((.((((...((((..((((((....))))))..)))).)))).)))))))
)))))).)))))))))))...)).)))))).)))))........
SIMILARITIES| miRBase mtr-MIR156b: 2e-27 PMRD ptc-miRf10647-akr: 3e-20 microPC miR156: 0.000000002 | UniProt no hits RFAM mir-156: 1e-20 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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