miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Avena barbata, Avena sativa, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Pseudoroegneria spicata, Triticum monococcum, Triticum turgidum subsp. durum, Brachypodium distachyon, Triticum aestivum



ABOUT THIS RECORD

ID: MNEST003034
species: Brachypodium distachyon
miRNA family: MIR1122
source: miRNEST

Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TAGATACATCCATATTTGGAC

miRNA*
 CGAAATATTACATGTATCTATA

mismatches: 3
bulges: 1
View larger
pre-miRNA
 CTAAATTGTCGTCGAAATATTACATGTATCTATACACTTTTAAAAAATAGATACATCCATATTTGGACAAATTTGAA

dot-bracket secondary structure
.((((((...(((.((((((...((((((((((.............))))))))))..)))))).))).))))))..


SIMILARITIES
miRBase bdi-MIR5183: 3e-16

PMRD bdi-miR1135: 0.000000000000004

microPC no hits		UniProt no hits

RFAM MIR1122: 8e-20		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;