ABOUT THIS RECORDspecies: Brachypodium distachyon
miRNA family: MIR1122
source: miRNEST
Taxonomy by NCBI:
Brachypodium distachyon Brachypodium Brachypodieae Pooideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGATACATCCATATTTGGGC miRNA* CGAAATATTACATGTATCTAGA mismatches: 3 bulges: 1 |
pre-miRNA
CTAAATTGTTGTCGAAATATTACATGTATCTAGACGCTTTTTAAGAATAGATACATCCATATTTGGGCAAATTTGAG
dot-bracket secondary structure
.((((((..((((.((((((...(((((((((....(((...)))..)))))))))..)))))).))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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CTAAATTGTTGTCGAAATATTACATGTATCTAGACGCTTTTTAAGAATAGATACATCCATATTTGGGCAAATTTGAG
dot-bracket secondary structure
.((((((..((((.((((((...(((((((((....(((...)))..)))))))))..)))))).))))))))))..
SIMILARITIES| miRBase bdi-MIR5183: 1e-21 PMRD bdi-miR1135: 3e-19 microPC miR1135: 0.00005 | UniProt no hits RFAM MIR1122: 9e-35 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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