miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Parthenium argentatum, Zinnia violacea, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST003156
species: Helianthus annuus
miRNA family: MIR156
source: miRNEST

Taxonomy by NCBI:
Helianthus annuus Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCACA

miRNA*
 TGCTCACTTCTCTTTCTGTCAGG

mismatches: 0
bulges: 2
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pre-miRNA
 TGGTTGAGAACTGACAGAAGAGAGTGAGCACAGGCCGGCAACTGTATACGGAGATTATACTCTTGTTGGAATTATGCGTGTGCTCACTTCTCTTTCTGTC
AGGGTCCTATT

dot-bracket secondary structure
.......((.((((((((((((((((((((((..(((((((..(((((.......)))))..))))))).........))))))))).)))).)))))))
))..)).....


SIMILARITIES
miRBase tcc-MIR156c: 0.00000009

PMRD vvi-miR156b: 0.0000003

microPC miR156: 6e-46		UniProt no hits

RFAM mir-156: 0.000006		most similar mature miRNAs

Identical with: miR156 from microPC (MNEST045182)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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