ABOUT THIS RECORDspecies: Arabidopsis thaliana
miRNA family: MIRf245
source: miRNEST
Taxonomy by NCBI:
Arabidopsis thaliana Arabidopsis Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGGTTTTGGCTCCGGAGGTT miRNA* CCTTTTGGGTCAACGCCTTTT mismatches: 4 bulges: 0 |
pre-miRNA
AGGTACACCGTATCCCTGCAGAGGCCATGGATAACACGGAACAGGTTTTGGCTCCGGAGGTTCCTGTCATCTGGCCCTTTCTTATCGCCACCTTTTGGGT
CAACGCCTTTT
dot-bracket secondary structure
.......((((((((..((....))...))))...))))...((((.(((((((.((((((...........(((...........))))))))).))))
))).))))...
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
AGGTACACCGTATCCCTGCAGAGGCCATGGATAACACGGAACAGGTTTTGGCTCCGGAGGTTCCTGTCATCTGGCCCTTTCTTATCGCCACCTTTTGGGT
CAACGCCTTTT
dot-bracket secondary structure
.......((((((((..((....))...))))...))))...((((.(((((((.((((((...........(((...........))))))))).))))
))).))))...
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
