ABOUT THIS RECORDspecies: Brassica oleracea var. alboglabra
miRNA family: MIR1508
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GAGAAGGGGAAATAGCAGTAG miRNA* CATGCCTTCTTTTTTACTC mismatches: 4 bulges: 2 |
pre-miRNA
ACCGGTTGAGAGAGAAGGGGAAATAGCAGTAGCCATTTTTTGCAGCTTCAATAGCCGCAATGATATTGTTCATGCCTTCTTTTTTACTCACGAAACC
dot-bracket secondary structure
...((.((((((((((((.((....((((((........((((.(((.....))).))))...))))))))...)))))))))))).))........
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACCGGTTGAGAGAGAAGGGGAAATAGCAGTAGCCATTTTTTGCAGCTTCAATAGCCGCAATGATATTGTTCATGCCTTCTTTTTTACTCACGAAACC
dot-bracket secondary structure
...((.((((((((((((.((....((((((........((((.(((.....))).))))...))))))))...)))))))))))).))........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt sp|P0ACZ7|EVGA_SHIFL: 0.0004 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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