ABOUT THIS RECORDspecies: Brassica oleracea var. alboglabra
miRNA family: MIRf129
source: miRNEST
Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCGGAGGGATGCCTTCCTTG miRNA* AGGGTGGACTCCTTCTGAATG mismatches: 5 bulges: 0 |
pre-miRNA
ACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGC
TGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA
dot-bracket secondary structure
.((....)).(((((((((..(((((.((..((((((((.((...((.((((....))))(((....((.((..((((.....))))...)).))..)))
.))..)).))))))))..)).)))))..))))).))))........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACGGAGACGAAGGACCAAGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCTGCTAAGGTGCGACCATCCTCGAGCTGCTTTCCAGCGAAGATGAGACGC
TGCTGGTCCGGAGGGATGCCTTCCTTGTCTTGGATCTTGGCCTTGA
dot-bracket secondary structure
.((....)).(((((((((..(((((.((..((((((((.((...((.((((....))))(((....((.((..((((.....))))...)).))..)))
.))..)).))))))))..)).)))))..))))).))))........
SIMILARITIES| miRBase no hits PMRD ath-miRf10060-akr: 0.0000000000001 microPC no hits | UniProt sp|P0CH32|UBQ4_ARATH: 2e-20 RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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