ABOUT THIS RECORDspecies: Glycine max
miRNA family: MIR399
source: miRNEST
Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCAAAGGAGAGCTGCCCTG miRNA* GGGCATGTCTCTTTTGGCAGG mismatches: 2 bulges: 0 |
pre-miRNA
GTAAGTAAGCAAATCATTCATAGGGCATGTCTCTTTTGGCAGGTAATGGTGATTACTTTGGATTAATTCAGAGCTACCAAAATATGTCTCATAAATAGTA
ATCAACTTGCCAAAGGAGAGCTGCCCTGTGAGTGTTTGACTTAAACA
dot-bracket secondary structure
((...((((((((.(((((((((((((..(((((((((((((((.....((((((((.(((((..(((............)))..))).)).....))))
)))))))))))))))))))..))))))))))))))))).)))).)).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTAAGTAAGCAAATCATTCATAGGGCATGTCTCTTTTGGCAGGTAATGGTGATTACTTTGGATTAATTCAGAGCTACCAAAATATGTCTCATAAATAGTA
ATCAACTTGCCAAAGGAGAGCTGCCCTGTGAGTGTTTGACTTAAACA
dot-bracket secondary structure
((...((((((((.(((((((((((((..(((((((((((((((.....((((((((.(((((..(((............)))..))).)).....))))
)))))))))))))))))))..))))))))))))))))).)))).)).
SIMILARITIES| miRBase mtr-MIR399b: 0.0000000000005 PMRD mtr-miR399b: 0.0000000000005 microPC miR399: 0.0001 | UniProt no hits RFAM mir-399: 0.0000001 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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