miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000345
species: Cichorium intybus
miRNA family: MIR166
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCTT

miRNA*
 GGGATGTTGGCTGGCTCGGTG

mismatches: 2
bulges: 2
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pre-miRNA
 GAGACAAGCAGTGGTTTGTGAGGGATGTTGGCTGGCTCGGTGCAATCACCTTTTCTTACCATTTCGTATAAAAGGGTGATGGCATCGGACCAGGCTTCAT
TCCTTTCAAACCCTTTTGTGATT

dot-bracket secondary structure
...(((((.((.((((((.((((((((..((((((.(((((((.((((((((((..(((......)))..)))))))))).))))))).))).))).)))
))))).)))))))))))))....


SIMILARITIES
miRBase vvi-MIR166b: 0.00002

PMRD ini-miR166: 0.000000002

microPC miR166: 2e-42		UniProt no hits

RFAM mir-166: 0.0004		most similar mature miRNAs

Identical with: miR166 from microPC (MNEST045937)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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