miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000346
species: Cichorium intybus
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATCCTTGCAGCTTCAAT

mismatches: 2
bulges: 0
View larger
pre-miRNA
 CTTTATGTTGATTTGAGAGATTGAAGCTGCCAGCATGATCTGGTGATGCCAAACTGGGTGGCCTGTGTATGTTTGTCCATATATGAGTGGATAATGTAAA
AGTTCTATATATAGTCAAATGTCTTTGTGTGTGTTTTTGGTGATGTGTTGGTATCTGTTCATGGGTAGAGTAAGGAGAGGTTAACCAGGTCATCCTTGCA
GCTTCAATCACTCATGCCCAACAATT

dot-bracket secondary structure
.....(((((...((((.((((((((((((.((.((((((((((...(((...((.....(((((((.((..((((((((......))))))))..((((
((...(((((((((..........)))))))))))))))..((((......)))).)).)))))))......))....)))..)))))))))).)).)))
))))))))).))))....)))))...


SIMILARITIES
miRBase csi-MIR167c: 0.00000000001

PMRD vvi-miR167a: 0.0000000002

microPC miR167: 2e-102		UniProt no hits

RFAM MIR167_1: 0.0000000002		most similar mature miRNAs

Identical with: miR167 from microPC (MNEST045486)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;