miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST000346
species: Cichorium intybus
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAGCATGATCTG

miRNA*
 GGTCATCCTTGCAGCTTCAAT

mismatches: 2
bulges: 0
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pre-miRNA
 CTTTATGTTGATTTGAGAGATTGAAGCTGCCAGCATGATCTGGTGATGCCAAACTGGGTGGCCTGTGTATGTTTGTCCATATATGAGTGGATAATGTAAA
AGTTCTATATATAGTCAAATGTCTTTGTGTGTGTTTTTGGTGATGTGTTGGTATCTGTTCATGGGTAGAGTAAGGAGAGGTTAACCAGGTCATCCTTGCA
GCTTCAATCACTCATGCCCAACAATT

dot-bracket secondary structure
.....(((((...((((.((((((((((((.((.((((((((((...(((...((.....(((((((.((..((((((((......))))))))..((((
((...(((((((((..........)))))))))))))))..((((......)))).)).)))))))......))....)))..)))))))))).)).)))
))))))))).))))....)))))...


SIMILARITIES
miRBase csi-MIR167c: 0.00000000001

PMRD vvi-miR167a: 0.0000000002

microPC miR167: 2e-102		UniProt no hits

RFAM MIR167_1: 0.0000000002		most similar mature miRNAs

Identical with: miR167 from microPC (MNEST045486)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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