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Species belonging to selected taxon:

Cichorium intybus, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST000347
species: Cichorium intybus
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAACATGATCTT

miRNA*
 GTCATCCTTGCAGCTTCAAT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CTTTATGCTGATTTGAGAGATTGAAGCTGCCAACATGATCTTGGTGATGCCAAACTGGGTCGCCTGTGTCTGATTGTCCATATATGAGTGGACAATGTCA
AGGCTCTATACATAGGCAAATGGCCGGGCGTGTGTTTTTGGTGATGTGTTCGTATCTGTTCATGGGTTGAGAAAGGAGAGGTTAACCAGGTCATCCTTGC
AGCTTCAATCACTCATGCCCAACAATT

dot-bracket secondary structure
......((.....((((.((((((((((((....((((.((((((..(((((((......((((((.(((...(((((.((.(((((((.(((...))).
..)))).))).)).)))))..)))))))))......))))))).((...((...(((.((((.....))))...)))..)).))))))))))))....))
)))))))))).)))).)).........


SIMILARITIES
miRBase csi-MIR167c: 0.0000002

PMRD vvi-miR167a: 0.00005

microPC miR167: 3e-55		UniProt no hits

RFAM MIR167_1: 0.000003		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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