miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST000347
species: Cichorium intybus
miRNA family: MIR167
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGAAGCTGCCAACATGATCTT

miRNA*
 GTCATCCTTGCAGCTTCAAT

mismatches: 4
bulges: 1
View larger
pre-miRNA
 CTTTATGCTGATTTGAGAGATTGAAGCTGCCAACATGATCTTGGTGATGCCAAACTGGGTCGCCTGTGTCTGATTGTCCATATATGAGTGGACAATGTCA
AGGCTCTATACATAGGCAAATGGCCGGGCGTGTGTTTTTGGTGATGTGTTCGTATCTGTTCATGGGTTGAGAAAGGAGAGGTTAACCAGGTCATCCTTGC
AGCTTCAATCACTCATGCCCAACAATT

dot-bracket secondary structure
......((.....((((.((((((((((((....((((.((((((..(((((((......((((((.(((...(((((.((.(((((((.(((...))).
..)))).))).)).)))))..)))))))))......))))))).((...((...(((.((((.....))))...)))..)).))))))))))))....))
)))))))))).)))).)).........


SIMILARITIES
miRBase csi-MIR167c: 0.0000002

PMRD vvi-miR167a: 0.00005

microPC miR167: 3e-55		UniProt no hits

RFAM MIR167_1: 0.000003		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record




Liczniki na strone;