ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIRf654
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AAGGTGGAGAAGCAGGGCACG miRNA* TGCCCATCTTCCCCATCATGA mismatches: 4 bulges: 0 |
pre-miRNA
GTTTGAACCCAACATGGTGTGTGGTGAGCAAGGTGGAGAAGCAGGGCACGTGTATTACTAACTCATCATTGCACCATCATGAAAATGTCTGGACGACATC
ATGAAGCCAACAAGGTACCTGGTGAGGTCACTGGTTCGAGGTTTCGGGACCTGGGTTCAGTGAGTAATCTCGAGCCAAAAGCTCATGGTTCTTGAAATGA
GTTAGTGTTCCATGTGCCCATCTTCCCCATCATGAACACACATACATTAATTTGCGGCAGA
dot-bracket secondary structure
.......(((((..((((((((((((..((.(((((.((((..(((((((((...(((((((((((((....((((((((((...((((.....))))))
)))).((((..........))))(((((((((((.((.(((((....))))).)).)))))))....))))((((.....)))).))))...)))..)))
)))))))...)))))))))..)))).))))).))..))).)))))))))..))).))....
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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GTTTGAACCCAACATGGTGTGTGGTGAGCAAGGTGGAGAAGCAGGGCACGTGTATTACTAACTCATCATTGCACCATCATGAAAATGTCTGGACGACATC
ATGAAGCCAACAAGGTACCTGGTGAGGTCACTGGTTCGAGGTTTCGGGACCTGGGTTCAGTGAGTAATCTCGAGCCAAAAGCTCATGGTTCTTGAAATGA
GTTAGTGTTCCATGTGCCCATCTTCCCCATCATGAACACACATACATTAATTTGCGGCAGA
dot-bracket secondary structure
.......(((((..((((((((((((..((.(((((.((((..(((((((((...(((((((((((((....((((((((((...((((.....))))))
)))).((((..........))))(((((((((((.((.(((((....))))).)).)))))))....))))((((.....)))).))))...)))..)))
)))))))...)))))))))..)))).))))).))..))).)))))))))..))).))....
SIMILARITIES| miRBase ptc-MIR164e: 0.0000000000009 PMRD ptc-miRf11320-akr: 0.0000000000009 microPC miR164: 8e-109 | UniProt no hits RFAM MIR164: 0.00000000002 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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