miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST000350
species: Cichorium intybus
miRNA family: MIRf789
source: miRNEST

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGCGGTTCAATAAAGCTGTGG

miRNA*
 ACGGCTTTCTTGAACTGCATG

mismatches: 1
bulges: 0
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pre-miRNA
 AAAATGGTGCTCTTTCTATTCTTCCACGGCTTTCTTGAACTGCATGGGCTTTGATCTATCAGATCTTTGTTTTTATATATAATCTTTGCGGTTCAATAAA
GCTGTGGGAAGATAGAGAAAGGATCAGCA

dot-bracket secondary structure
....((((.((.((((((((.((((((((((((.((((((((((.((((...(((((...)))))...)).............)).)))))))))).)))
))))))))).)))))))).)).))))...


SIMILARITIES
miRBase mtr-MIR396b: 0.0000000004

PMRD lja-miR396: 0.0000000004

microPC miR396: 1e-44		UniProt no hits

RFAM MIR396: 0.000000008		most similar mature miRNAs

Identical with: miR396 from microPC (MNEST046087)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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