ABOUT THIS RECORDspecies: Cichorium intybus
miRNA family: MIRf493
source: miRNEST
Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GATCTCGGACCAGGCTTCATT miRNA* TGAAGTTTGATCCAAGATCCT mismatches: 2 bulges: 0 |
pre-miRNA
TGGAGTTGTTTGGAATGAAGTTTGATCCAAGATCCTTTTTGCATGTGTGTTTTTTAGGGATCTCGGACCAGGCTTCATTCTTGACAATTGT
dot-bracket secondary structure
...(((((((.(((((((((((((.(((.((((((((...(((....))).....)))))))).))).))))))))))))).)))))))..
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
TGGAGTTGTTTGGAATGAAGTTTGATCCAAGATCCTTTTTGCATGTGTGTTTTTTAGGGATCTCGGACCAGGCTTCATTCTTGACAATTGT
dot-bracket secondary structure
...(((((((.(((((((((((((.(((.((((((((...(((....))).....)))))))).))).))))))))))))).)))))))..
SIMILARITIES| miRBase ptc-MIR166o: 0.00000000007 PMRD ptc-miR166o: 0.00000000007 microPC miR166: 0.000001 | UniProt no hits RFAM mir-166: 0.000000001 | most similar mature miRNAs |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
