miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST003575
species: Zea mays
miRNA family: MIRf822
source: miRNEST

Taxonomy by NCBI:
Zea mays Zea Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 AGGACTAAACTTTAGTCCCTT

miRNA*
 GGGACTAAAGTTTAGTCTCAT

mismatches: 1
bulges: 0
View larger
pre-miRNA
 GGACTATATGTTTGGTTCCATAGGACTAAACTTTAGTCCCTTATAGTCTATTTTAGTCCCTAAATATGGGGACTAAAAGGAAATCAATCTGATTTCCTCT
CCTCTTTTTAGTCCTATCTTTGGTAATTTTGAGACTAAAAAAGAGGGACTAAAGTTTAGTCTCATGGAACCAAACATGCCCTA

dot-bracket secondary structure
((....(((((((((((((((.((((((((((((((((((((........((((((((((((....))))))))))))((((((((...))))))))...
....(((((((((.((.............)).))))))))).)))))))))))))))))))).))))))))))))))).))..


SIMILARITIES
miRBase no hits

PMRD osa-miRf10823-akr: 0.0006

microPC no hits		UniProt no hits

RFAM no hits		most similar mature miRNAs

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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