miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Bicyclus anynana, Drosophila melanogaster, Bombyx mori, Aedes aegypti, Culex quinquefasciatus, Anopheles gambiae, Dendroctonus ponderosae, Nasonia vitripennis, Drosophila simulans, Glossina morsitans morsitans, Choristoneura fumiferana, Spodoptera frugiperda, Heliothis virescens, Phlebotomus papatasi, Drosophila sechellia, Drosophila auraria, Antheraea assama, Drosophila pseudoobscura, Teleopsis dalmanni, Lutzomyia longipalpis, Nasonia giraulti, Bombus terrestris, Drosophila willistoni, Drosophila ananassae, Solenopsis invicta, Drosophila virilis, Drosophila erecta, Drosophila grimshawi, Ceratitis capitata, Spodoptera littoralis, Samia cynthia ricini, Drosophila mojavensis, Danaus plexippus, Cochliomyia hominivorax, Anopheles stephensi, Diabrotica virgifera virgifera, Haematobia irritans irritans, Papilio xuthus, Polypedilum vanderplanki, Ostrinia nubilalis, Trichoplusia ni, Drosophila yakuba, Epiphyas postvittana, Apis mellifera, Tribolium castaneum

ABOUT THIS RECORD

ID: MNEST036423
species: Drosophila melanogaster
miRNA family: mir-280
source: miRBase, original name: dme-mir-280 (MI0000365)

Taxonomy by NCBI:
Drosophila melanogaster melanogaster subgroup melanogaster group Sophophora Drosophila Drosophiliti Drosophilina Drosophilini Drosophilinae Drosophilidae Ephydroidea Acalyptratae Schizophora Cyclorrhapha Eremoneura Muscomorpha Brachycera Diptera Endopterygota Neoptera Pterygota Dicondylia Insecta Hexapoda Pancrustacea Mandibulata Arthropoda Panarthropoda Protostomia Coelomata Bilateria Eumetazoa Metazoa Fungi/Metazoa group Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGTATTTACGTTGCATATGAAATGATA

miRNA*
TTATTTTATATGCAGGTATATGCAAG

mismatches: 2
bulges: 1

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pre-miRNA
TGGCTTTTATGTATTTACGTTGCATATGAAATGATATTTATAGTAAACAGATTATTTTATATGCAGGTATATGCAAGTCGAGGTCCTCCACACTG

dot-bracket secondary structure
.((((((..(((((.(((.((((((((((((((((.((((...))))...))))))))))))))))))).)))))....))))))..........

SIMILARITIES

miRBase dse-mir-280: 3e-44

PMRD no hits

microPC no hits

UniProt no hits

RFAM mir-280: 5e-37

Identical with: dse-mir-280 from miRBase (MNEST037160)

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
additional data
download this record
evidence: Northern

references
[1] Lai EC, Tomancak P, Williams RW, Rubin GM, Genome Biol. 4:R42(2003)., "Computational identification of Drosophila microRNA genes"