ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: miR3952
source: miRNEST
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGAAGGGCCTTTCTAGAGCAC miRNA* GCTGTAGAGTGTCCCTTCACC mismatches: 4 bulges: 0 |
pre-miRNA
ACTTATGCATATTCTTTCCTGTGCTGTAGAGTGTCCCTTCACCCTCGGAAACGTCACCATGGACTGGAACTGGGAGCGAAGAAAGTGAGATCTGATGGTT
GGCGTTGAACGTGGCCAGCTGCATAACAGAGATGGTGTTTTCATAGTTGAAGGGCCTTTCTAGAGCACTGGAATCCATTCGTAATTA
dot-bracket secondary structure
..(((((.((.....((((.(((((.(((((...(((((((..((..((((...((((((...((...(((............))).)).((((.(((((
(((..........)))))))).....)))).)))))).))))..)).)))))))...))))).))))).))))...)).)))))...
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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ACTTATGCATATTCTTTCCTGTGCTGTAGAGTGTCCCTTCACCCTCGGAAACGTCACCATGGACTGGAACTGGGAGCGAAGAAAGTGAGATCTGATGGTT
GGCGTTGAACGTGGCCAGCTGCATAACAGAGATGGTGTTTTCATAGTTGAAGGGCCTTTCTAGAGCACTGGAATCCATTCGTAATTA
dot-bracket secondary structure
..(((((.((.....((((.(((((.(((((...(((((((..((..((((...((((((...((...(((............))).)).((((.(((((
(((..........)))))))).....)))).)))))).))))..)).)))))))...))))).))))).))))...)).)))))...
SIMILARITIES| miRBase csi-MIR3952: 3e-36 PMRD no hits microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
