ABOUT THIS RECORDspecies: Citrus reticulata
miRNA family: MIR414
source: miRNEST
Taxonomy by NCBI:
Citrus reticulata Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCATCTTCATCATCATCCACC miRNA* TGGTGGTCATGGAGTGATG mismatches: 1 bulges: 2 |
pre-miRNA
GGGTAGAGCTGGTGGTGGTCATGGAGTGATGAGATTTTGTATCTGGCCGCTACAGACTCCGGAGATGCTACTGTGGACCACTACCTTCTTCCACCGCAAA
CTTATGATTTTCTAATAATTTTCATAATTTTAATTACAATATCACCATCATCTTCATCATCATCCACCTCATAAAAA
dot-bracket secondary structure
.(((...)))(((((((((.(((((((((((.(((.((((((((((............)))))..(((....(((((............))))).)))((
.((((((..((.....))...)))))).))....))))).)))..))))).)))))).)))).))))).........
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
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GGGTAGAGCTGGTGGTGGTCATGGAGTGATGAGATTTTGTATCTGGCCGCTACAGACTCCGGAGATGCTACTGTGGACCACTACCTTCTTCCACCGCAAA
CTTATGATTTTCTAATAATTTTCATAATTTTAATTACAATATCACCATCATCTTCATCATCATCCACCTCATAAAAA
dot-bracket secondary structure
.(((...)))(((((((((.(((((((((((.(((.((((((((((............)))))..(((....(((((............))))).)))((
.((((((..((.....))...)))))).))....))))).)))..))))).)))))).)))).))))).........
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM mir-598: 0.0006 | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: not a miRNA
Source sequences
download this record
